| ROUND | Q1 | Q2 | Q3 | Q4 | R1 | R2 | R3 | QF | SF | F | |||||||||||||
| l1 | l2 | l1 | l2 | l1 | l2 | l1 | l2 | r1 | r2 | r3 | r4 | r5 | r6 | l1 | l2 | l1 | l2 | l1 | l2 | l1 | l2 | ||
| Season archive |
| Tuesday, 28 July 2009 | ||||||
| q3l1 |  Bnei Yehuda | 1-0 | Paços Ferreira | |||
| Thursday, 30 July 2009 | ||||||
| q3l1 |  Club Brugge | 3-2 | FC Lahti | |||
| q3l1 |  CSKA | 1-0 | Derry City | |||
| q3l1 |  Tromsø | 2-1 | Slaven Belupo | |||
| q3l1 |  Fenerbahçe | 5-1 | Budapest-Honvéd | |||
| q3l1 |  IFK Göteborg | 1-3 | Hapoel Tel Aviv | |||
| q3l1 |  Aberdeen | 1-5 | Sigma Olomouc | |||
| q3l1 |  FCSB | 3-0 | Motherwell | |||
| q3l1 |  Brøndby | 1-1 | Legia Warszawa | |||
| q3l1 |  Athletic Bilbao | 0-1 | Young Boys | |||
| q3l1 |  Roma | 3-1 | AA Gent | |||
| q3l1 | Sporting Braga | 1-2 | Elfsborg | |||
| q3l1 |  KR | 2-2 | FC Basel | |||
| q3l1 |  PSV | 1-0 | Cherno More | |||
| q3l1 | Rijeka | 1-2 | Metalist* | |||
| q3l1 | Helsingborg | 2-1 | Sarajevo | |||
| q3l1 |  SK Rapid Wien | 2-1 | APOP/Kinyras | |||
| q3l1 |  Dinamo Tbilisi | 2-0 | Crvena Zvezda | |||
| q3l1 | Vojvodina | 1-1 | FK Austria | |||
| q3l1 | Vålerenga | 1-2 | PAOK | |||
| q3l1 | Polonia Warszawa | 0-1 | NAC | |||
| q3l1 | St. Patrick's | 1-0 | Krylia Sovetov | |||
| q3l1 | Vaduz | 0-1 | Slovan Liberec | |||
| q3l1 | Maccabi Netanya | 1-4 | Galatasaray | |||
| q3l1 |  MŠK Žilina | 1-1 | Hajduk Split | |||
| q3l1 | Metalurh Donetsk | 2-0 | Interblock | |||
| q3l1 | Fredrikstad | 1-6 | Lech Poznań | |||
| q3l1 | Randers | 0-4 | Hamburger SV | |||
| q3l1 |  Rabotnički | 3-4 | OB | |||
| q3l1 | FC Honka | 0-1 | Qarabag | |||
| q3l1 |  Vetra | 0-3 | Fulham | |||
| q3l1 | FC Vaslui | 2-0 | Omonia | |||
| q3l1 | Slavija | 0-2 | VSS Košice | |||
| q3l1 | Sevojno | 0-2 | Lille | |||
| q3l1 |  OFK Petrovac | 1-2 | SK Sturm Graz | |||
| Tuesday, 4 August 2009 | ||||||
| q3l2 | Omonia | 1-1 | FC Vaslui | 1-3 | ||
| Thursday, 6 August 2009 | ||||||
| q3l2 | Fulham | 3-0 | Vetra | 6-0 | ||
| q3l2 | Hamburger SV | 0-1 | Randers | 4-1 | ||
| q3l2 | Lille | 2-0 | Sevojno | 4-0 | ||
| q3l2 | Motherwell | 1-3 | FCSB | 1-6 | ||
| q3l2 | AA Gent | 1-7 | Roma | 2-10 | ||
| q3l2 | Lech Poznań | 1-2 | Fredrikstad | 7-3 | ||
| q3l2 | Legia Warszawa | 2-2 | Brøndby | 3-3 | ||
| q3l2 | Young Boys | 1-2 | Athletic Bilbao | 2-2 | ||
| q3l2 | Galatasaray | 6-0 | Maccabi Netanya | 10-1 | ||
| q3l2 | Paços Ferreira | 0-1 | Bnei Yehuda | 0-2 | ||
| q3l2 | OB | 3-0 | Rabotnički | 7-3 | ||
| q3l2 | FC Lahti | 1-1 | Club Brugge | 3-4 | ||
| q3l2 | FK Austria | 4-2 | Vojvodina | 5-3 | ||
| q3l2 | Budapest-Honvéd | 1-1 | Fenerbahçe | 2-6 | ||
| q3l2 | NAC | 3-1 | Polonia Warszawa | 4-1 | ||
| q3l2 | Hajduk Split | 0-1 | MŠK Žilina | 1-2 | ||
| q3l2 | Crvena Zvezda | 5-2 | Dinamo Tbilisi | 5-4 | ||
| q3l2 | SK Sturm Graz | 5-0 | OFK Petrovac | 7-1 | ||
| q3l2 | Slovan Liberec | 2-0 | Vaduz | 3-0 | ||
| q3l2 | Sigma Olomouc | 3-0 | Aberdeen | 8-1 | ||
| q3l2 | FC Basel | 3-1 | KR | 5-3 | ||
| q3l2 | Elfsborg | 2-0 | Sporting Braga | 4-1 | ||
| q3l2 | PAOK | 0-1 | Vålerenga | 2-2 | ||
| q3l2 | Hapoel Tel Aviv | 1-1 | IFK Göteborg | 4-2 | ||
| q3l2 | Krylia Sovetov | 3-2 | St. Patrick's | 3-3 | ||
| q3l2 | Sarajevo | 2-1 | Helsingborg | 3-3p?-? | ||
| q3l2 | Qarabag | 2-1 | FC Honka | 3-1 | ||
| q3l2 | Derry City | 1-1 | CSKA | 1-2 | ||
| q3l2 | Slaven Belupo | 0-2 | Tromsø | 1-4 | ||
| q3l2 | VSS Košice | 3-1 | Slavija | 5-1 | ||
| q3l2 | Cherno More | 0-1 | PSV | 0-2 | ||
| q3l2 | Interblock | 0-3 | Metalurh Donetsk | 0-5 | ||
| q3l2 | Metalist* | 2-0 | Rijeka | 4-1 | ||
| q3l2 | APOP/Kinyras | 2-2 | SK Rapid Wien | 3-4, aet | ||
