| ROUND | Q1 | Q2 | Q3 | Q4 | R1 | R2 | R3 | QF | SF | F | |||||||||||||
| l1 | l2 | l1 | l2 | l1 | l2 | l1 | l2 | r1 | r2 | r3 | r4 | r5 | r6 | l1 | l2 | l1 | l2 | l1 | l2 | l1 | l2 | ||
| Season archive |
| Tuesday, 14 July 2009 | ||||||
| q2l1 |  Sliema Wanderers | 0-0 | Maccabi Netanya | |||
| q2l1 |  Crusaders | 1-1 | Rabotnički | |||
| Thursday, 16 July 2009 | ||||||
| q2l1 |  Rosenborg | 0-0 | Qarabag | |||
| q2l1 |  Falkirk | 1-0 | Vaduz | |||
| q2l1 |  Omonia | 4-0 | HB | |||
| q2l1 |  AaB | 0-0 | Slavija | |||
| q2l1 |  FCSB | 2-0 | Újpest | |||
| q2l1 | Brøndby | 0-1 | Flora | |||
| q2l1 |  Legia Warszawa | 3-0 | Rustavi | |||
| q2l1 |  KR | 2-0 | Larisa | |||
| q2l1 |  NAC | 6-0 | Gandzasar | |||
| q2l1 |  SK Rapid Wien | 5-0 | Vllaznia | |||
| q2l1 |  Skonto | 1-1 | Derry City | |||
| q2l1 | SK Sturm Graz | 2-1 | Široki Brijeg | |||
| q2l1 |  Sigma Olomouc | 1-1 | Fram | |||
| q2l1 | FC Basel | 3-0 | FC Santa Coloma | |||
| q2l1 |  Dinamo Minsk | 0-0 | Tromsø | |||
| q2l1 |  Elfsborg | 3-0 | Szombathely Haladás | |||
| q2l1 | St. Patrick's | 1-1 | Valletta | |||
| q2l1 |  Gorica | 1-0 | FC Lahti | |||
| q2l1 |  Zimbru | 0-0 | Paços Ferreira | |||
| q2l1 | Anorthosis | 2-1 | OFK Petrovac | |||
| q2l1 | FK Liepāja | 2-1 | Dinamo Tbilisi | |||
| q2l1 | Rudar Velenje | 0-1 | Crvena Zvezda | |||
| q2l1 | Bnei Yehuda | 4-0 | FC Daugava | |||
| q2l1 | Flamurtari | 1-0 | Motherwell | |||
| q2l1 | Sarajevo | 1-0 | Spartak Trnava | |||
| q2l1 | MŠK Žilina | 2-0 | Dacia | |||
| q2l1 |  Metalurh Donetsk | 3-0 | Partizan* | |||
| q2l1 | Naftan | 2-1 | AA Gent | |||
| q2l1 |  Cherno More | 1-0 | Iskra-Stal | |||
| q2l1 |  Sūduva | 0-1 | Randers | |||
| q2l1 | FC Honka | 2-0 | Bangor City | |||
| q2l1 | Vetra | 0-1 | HJK | |||
| q2l1 | Zestafoni | 1-2 | Helsingborg | |||
| q2l1 |  Tobol | 1-1 | Galatasaray | |||
| q2l1 |  FC Differdange 03 | 1-0 | Rijeka | |||
| q2l1 | Sevojno | 0-0 | Kaunas | |||
| q2l1 | Milano | 0-4 | Slaven Belupo | |||
| q2l1 |  Juvenes/Dogana | 0-1 | Polonia Warszawa | |||
| Thursday, 23 July 2009 | ||||||
| q2l2 | Tromsø | 4-1 | Dinamo Minsk | 4-1 | ||
| q2l2 | Motherwell | 8-1 | Flamurtari | 8-2 | ||
| q2l2 | AA Gent | 1-0 | Naftan | 2-2 | ||
| q2l2 | Újpest | 1-2 | FCSB | 1-4 | ||
| q2l2 | Galatasaray | 2-0 | Tobol | 3-1 | ||
| q2l2 | Paços Ferreira | 1-0 | Zimbru | 1-0 | ||
| q2l2 | HJK | 1-3 | Vetra | 2-3 | ||
| q2l2 | FC Lahti | 2-0 | Gorica | 2-1 | ||
| q2l2 | Rijeka | 3-0 | FC Differdange 03 | 3-1 | ||
| q2l2 | Helsingborg | 2-2 | Zestafoni | 4-3, aet | ||
| q2l2 | Crvena Zvezda | 4-0 | Rudar Velenje | 5-0 | ||
| q2l2 | Dinamo Tbilisi | 3-1 | FK Liepāja | 4-3 | ||
| q2l2 | Fram | 0-2 | Sigma Olomouc | 1-3 | ||
| q2l2 | Spartak Trnava | 1-1 | Sarajevo | 1-2 | ||
| q2l2 | Polonia Warszawa | 4-0 | Juvenes/Dogana | 5-0 | ||
| q2l2 | Flora | 1-4 | Brøndby | 2-4 | ||
| q2l2 | Vllaznia | 0-3 | SK Rapid Wien | 0-8 | ||
| q2l2 | HB | 1-4 | Omonia | 1-8 | ||
| q2l2 | Vaduz | 2-0 | Falkirk | 2-1, aet | ||
| q2l2 | Valletta | 0-1 | St. Patrick's | 1-2 | ||
| q2l2 | FC Daugava | 0-1 | Bnei Yehuda | 0-5 | ||
| q2l2 | Qarabag | 1-0 | Rosenborg | 1-0 | ||
| q2l2 | Maccabi Netanya | 3-0 | Sliema Wanderers | 3-0 | ||
| q2l2 | Larisa | 1-1 | KR | 1-3 | ||
| q2l2 | Derry City | 1-0 | Skonto | 2-1 | ||
| q2l2 | Slaven Belupo | 8-2 | Milano | 12-2 | ||
| q2l2 | Randers | 1-1 | Sūduva | 2-1 | ||
| q2l2 | Bangor City | 0-1 | FC Honka | 0-3 | ||
| q2l2 | Rabotnički | 4-2 | Crusaders | 5-3 | ||
| q2l2 | Kaunas | 1-1 | Sevojno | 1-1 | ||
| q2l2 | Rustavi | 0-1 | Legia Warszawa | 0-4 | ||
| q2l2 | Široki Brijeg | 1-1 | SK Sturm Graz | 2-3 | ||
| q2l2 | Szombathely Haladás | 0-0 | Elfsborg | 0-3 | ||
| q2l2 | FC Santa Coloma | 1-4 | FC Basel | 1-7 | ||
| q2l2 | Partizan* | 1-2 | Metalurh Donetsk | 1-5 | ||
| q2l2 | Dacia | 0-1 | MŠK Žilina | 0-3 | ||
| q2l2 | Slavija | 3-1 | AaB | 3-1 | ||
| q2l2 | Iskra-Stal | 0-3 | Cherno More | 0-4 | ||
| q2l2 | OFK Petrovac | 3-1 | Anorthosis | 4-3, aet | ||
| q2l2 | Gandzasar | 0-2 | NAC | 0-8 | ||
