| ROUND | Q1 | Q2 | R1 | R2 | R3 | R4 | QF | SF | F | |||||||||||
| l1 | l2 | l1 | l2 | l1 | l2 | r1 | r2 | r3 | r4 | r5 | l1 | l2 | l1 | l2 | l1 | l2 | l1 | l2 | ||
| Season archive |
| Thursday, 14 August 2008 | ||||||
| q2l1 |  WIT Georgia | - | FK Austria | |||
| q2l1 |  Deportivo | 0-0 | Hajduk Split | |||
| q2l1 |  Lech Poznań | 6-0 | Grasshoppers | |||
| q2l1 |  Interblock | 0-2 | Hertha BSC Berlin | |||
| q2l1 |  Sporting Braga | 1-0 | Zrinjski | |||
| q2l1 |  Manchester City | 0-1 | FC Midtjylland | |||
| q2l1 |  Queen of the South | 1-2 | FC Nordsjælland | |||
| q2l1 | Široki Brijeg | 1-2 | Besiktas | |||
| q2l1 |  AEK | 0-1 | Omonia | |||
| q2l1 | FC Zürich | 1-1 | SK Sturm Graz | |||
| q2l1 |  Dnipro | 3-2 | Bellinzona | |||
| q2l1 |  Slovan Liberec | 1-2 | MŠK Žilina | |||
| q2l1 |  AA Gent | 2-1 | Kalmar FF | |||
| q2l1 |  FH | 1-4 | Aston Villa | |||
| q2l1 | FC København | 3-1 | Lillestrøm | |||
| q2l1 | Aris | 1-0 | Slaven Belupo | |||
| q2l1 | Young Boys | 4-1 | Debrecen | |||
| q2l1 | Elfsborg | 2-2 | St. Patrick's | |||
| q2l1 | Stabæk | 2-1 | Rennes | |||
| q2l1 | APOEL | 2-2 | Crvena Zvezda | |||
| q2l1 | Djurgården | 2-1 | Rosenborg | |||
| q2l1 |  Maccabi Netanya | 1-1 | Cherno More | |||
| q2l1 |  Sūduva | 1-4 | FC Salzburg | |||
| q2l1 | Litex | 0-0 | Hapoel Ironi Kiryat Shmona | |||
| q2l1 | VfB Stuttgart | 2-1 | Györi ETO | |||
| q2l1 |  FC Haka | 0-4 | Brøndby | |||
| q2l1 | Legia Warszawa | 1-2 | FK Moskva | |||
| q2l1 |  Vllaznia | 0-3 | Napoli | |||
| q2l1 | Vojvodina | 0-0 | Hapoel Tel Aviv | |||
| q2l1 |  FK Liepāja | 0-2 | FC Vaslui | |||
| q2l1 | FC Honka | 0-0 | Viking | |||
| q2l1 | Borac Čačak | 1-0 | Lokomotiv Sofia | |||
| Tuesday, 26 August 2008 | ||||||
| q2l2 | Lokomotiv Sofia | 1-1 | Borac Čačak | 1-2 | ||
| q2l2 | FC Nordsjælland | 2-1 | Queen of the South | 4-2 | ||
| Thursday, 28 August 2008 | ||||||
| q2l2 | Napoli | 5-0 | Vllaznia | 8-0 | ||
| q2l2 | Aston Villa | 1-1 | FH | 5-2 | ||
| q2l2 | Hajduk Split | 0-2 | Deportivo | 0-2 | ||
| q2l2 | St. Patrick's | 2-1 | Elfsborg | 4-3 | ||
| q2l2 | Rennes | 2-0 | Stabæk | 3-2 | ||
| q2l2 | Györi ETO | 1-4 | VfB Stuttgart | 2-6 | ||
| q2l2 | Bellinzona | 2-1 | Dnipro | 4-4, aet | ||
| q2l2 | Crvena Zvezda | 3-3 | APOEL | 5-5, aet | ||
| q2l2 | Grasshoppers | 0-0 | Lech Poznań | 0-6 | ||
| q2l2 | Besiktas | 4-0 | Široki Brijeg | 6-1 | ||
| q2l2 | Debrecen | 2-3 | Young Boys | 3-7 | ||
| q2l2 | SK Sturm Graz | 1-1 | FC Zürich | 2-2, aet, p2-4 | ||
| q2l2 | MŠK Žilina | 2-1 | Slovan Liberec | 4-2 | ||
| q2l2 | Brøndby | 2-0 | FC Haka | 6-0 | ||
| q2l2 | FK Austria | 2-0 | WIT Georgia | 2-0 | ||
| q2l2 | FC Vaslui | 3-1 | FK Liepāja | 5-1 | ||
| q2l2 | Omonia | 2-2 | AEK | 3-2 | ||
| q2l2 | Cherno More | 2-0 | Maccabi Netanya | 3-1 | ||
| q2l2 | Kalmar FF | 4-0 | AA Gent | 5-2 | ||
| q2l2 | Rosenborg | 5-0 | Djurgården | 6-2 | ||
| q2l2 | Hertha BSC Berlin | 1-0 | Interblock | 3-0 | ||
| q2l2 | Slaven Belupo | 2-0 | Aris | 2-1 | ||
| q2l2 | FC Salzburg | 0-1 | Sūduva | 4-2 | ||
| q2l2 | Viking | 1-2 | FC Honka | 1-2 | ||
| q2l2 | Zrinjski | 0-2 | Sporting Braga | 0-3 | ||
| q2l2 | Hapoel Ironi Kiryat Shmona | 1-2 | Litex | 1-2 | ||
| q2l2 | FC Midtjylland | 0-1 | Manchester City | 1-1, aet, p2-4 | ||
| q2l2 | Hapoel Tel Aviv | 3-0 | Vojvodina | 3-0 | ||
| q2l2 | FK Moskva | 2-0 | Legia Warszawa | 4-1 | ||
| q2l2 | Lillestrøm | 2-4 | FC København | 3-7 | ||
