| ROUND | Q1 | Q2 | Q3 | Q4 | R1 | R2 | R3 | QF | SF | F | |||||||||||||
| l1 | l2 | l1 | l2 | l1 | l2 | l1 | l2 | r1 | r2 | r3 | r4 | r5 | r6 | l1 | l2 | l1 | l2 | l1 | l2 | l1 | l2 | ||
| Season archive |
| Tuesday, 28 June 2016 | ||||||
| q1l1 |  St. Patrick's | 1-0 | Jeunesse Esch | |||
| q1l1 |  Partizani | 0-0 | Slovan Bratislava | |||
| q1l1 |  Kapaz | 0-0 | Dacia | |||
| q1l1 |  Rabotnički | 1-1 | Budućnost | |||
| Thursday, 30 June 2016 | ||||||
| q1l1 |  Hearts | 2-1 | FC Infonet | |||
| q1l1 |  IFK Göteborg | 5-0 | Llandudno | |||
| q1l1 | Aberdeen | 3-1 | Fola | |||
| q1l1 |  KR | 2-1 | Glenavon | |||
| q1l1 | AIK | 2-0 | Bala Town | |||
| q1l1 |  MOL Fehérvár | 3-0 | Zaria Bălți | |||
| q1l1 | Shamrock Rovers | 0-2 | RoPS | |||
| q1l1 | Linfield | 0-1 | Cork City | |||
| q1l1 | Valur | 1-4 | Brøndby | |||
| q1l1 |  Maccabi Tel Aviv | 3-0 | Gorica | |||
| q1l1 |  Dinamo Minsk | 2-1 | Spartaks | |||
| q1l1 |  Slavia | 1-0 | Zagłębie Lubin | |||
| q1l1 | Connah's Quay | 0-0 | Stabæk | |||
| q1l1 | Spartak Trnava | 3-0 | Hibernians | |||
| q1l1 | Zimbru | 0-1 | Chikhura | |||
| q1l1 | Odd | 2-0 | IFK Mariehamn | |||
| q1l1 |  Čukarički | 3-0 | Ordabasy | |||
| q1l1 |  AEK | 3-0 | Folgore | |||
| q1l1 | Dila Gori | 1-0 | Shirak | |||
| q1l1 |  Atlantas | 0-2 | HJK | |||
| q1l1 | JFK Ventspils | 2-0 | Víkingur | |||
| q1l1 |  Vaduz | 3-1 | Sileks | |||
| q1l1 | Fiorita | 0-5 | Debrecen | |||
| q1l1 | Domžale | 3-1 | Lusitanos | |||
| q1l1 |  Sloboda Tuzla | 0-0 | Beitar Jerusalem | |||
| q1l1 | Breiðablik | 2-3 | Jelgava* | |||
| q1l1 | NSÍ | 0-2 | Shakhter | |||
| q1l1 | FC Midtjylland | 1-0 | Sūduva | |||
| q1l1 | Teuta | 0-1 | Kairat | |||
| q1l1 | Beroe | 0-0 | Radnik Bijeljina | |||
| q1l1 | Široki Brijeg | 1-1 | Birkirkara | |||
| q1l1 | Levadia Tallinn | 1-1 | HB | |||
| q1l1 | Urartu | 0-1 | Omonia | |||
| q1l1 | Aktobe | 1-1 | MTK | |||
| q1l1 |  Admira | 1-1 | Spartak Myjava | |||
| q1l1 | Shkëndija | 2-0 | Cracovia | |||
| q1l1 | FC Differdange 03 | 1-1 | Cliftonville | |||
| q1l1 | Qabala | 5-1 | Samtredia | |||
| q1l1 | Bokelj | 1-1 | Vojvodina | |||
| q1l1 | Balzan Youths | 0-2 | Neftçi | |||
| q1l1 | UE Santa Coloma | 1-3 | Lokomotiva | |||
| q1l1 | Kukësi | 1-1 | Rudar | |||
| q1l1 | Riteriai | 2-1 | Nõmme Kalju | |||
| q1l1 |  Europa FC | 2-0 | Pyunik | |||
| Tuesday, 5 July 2016 | ||||||
| q1l2 | Jeunesse Esch | 2-1 | St. Patrick's | 2-2 | ||
| q1l2 | Birkirkara | 2-0 | Široki Brijeg | 3-1 | ||
| q1l2 | Chikhura | 2-3 | Zimbru | 3-3 | ||
| Wednesday, 6 July 2016 | ||||||
| q1l2 | FC Infonet | 2-4 | Hearts | 3-6 | ||
| Thursday, 7 July 2016 | ||||||
| q1l2 | Omonia | 4-1 | Urartu | 5-1, aet | ||
| q1l2 | Brøndby | 6-0 | Valur | 10-1 | ||
| q1l2 | Slovan Bratislava | - | Partizani | 0-0p?-? | ||
| q1l2 | HJK | 1-1 | Atlantas | 3-1 | ||
| q1l2 | MTK | 2-0 | Aktobe | 3-1 | ||
| q1l2 | Cork City | 1-1 | Linfield | 2-1 | ||
| q1l2 | Debrecen | 2-0 | Fiorita | 7-0 | ||
| q1l2 | Glenavon | 0-6 | KR | 1-8 | ||
| q1l2 | Beitar Jerusalem | 1-0 | Sloboda Tuzla | 1-0 | ||
| q1l2 | Vojvodina | 5-0 | Bokelj | 6-1 | ||
| q1l2 | Stabæk | 0-1 | Connah's Quay | 0-1 | ||
| q1l2 | Gorica | 0-1 | Maccabi Tel Aviv | 0-4 | ||
| q1l2 | Shirak | 1-0 | Dila Gori | 1-1, aet, p4-1 | ||
| q1l2 | Zagłębie Lubin | 3-0 | Slavia | 3-1 | ||
| q1l2 | Cliftonville | 2-0 | FC Differdange 03 | 3-1 | ||
| q1l2 | Sileks | 1-2 | Vaduz | 2-5 | ||
| q1l2 | Neftçi | 1-2 | Balzan Youths | 3-2 | ||
| q1l2 | HB | 0-2 | Levadia Tallinn | 1-3 | ||
| q1l2 | Hibernians | 0-3 | Spartak Trnava | 0-6 | ||
| q1l2 | Pyunik | 2-1 | Europa FC | 2-3 | ||
| q1l2 | RoPS | 1-1 | Shamrock Rovers | 3-1 | ||
| q1l2 | Samtredia | 2-1 | Qabala | 3-6 | ||
| q1l2 | Folgore | 1-3 | AEK | 1-6 | ||
| q1l2 | Zaria Bălți | 2-0 | MOL Fehérvár | 2-3 | ||
| q1l2 | Sūduva | 0-1 | FC Midtjylland | 0-2 | ||
| q1l2 | Shakhter | 5-0 | NSÍ | 7-0 | ||
| q1l2 | Rudar | 0-1 | Kukësi | 1-2 | ||
| q1l2 | Budućnost | 1-0 | Rabotnički | 2-1 | ||
| q1l2 | Kairat | 5-0 | Teuta | 6-0 | ||
| q1l2 | Cracovia | 1-2 | Shkëndija | 1-4 | ||
| q1l2 | IFK Mariehamn | 1-1 | Odd | 1-3 | ||
| q1l2 | Dacia | 0-1 | Kapaz | 0-1 | ||
| q1l2 | Llandudno | 1-2 | IFK Göteborg | 1-7 | ||
| q1l2 | Radnik Bijeljina | 0-2 | Beroe | 0-2 | ||
| q1l2 | Lokomotiva | 4-1 | UE Santa Coloma | 7-2 | ||
| q1l2 | Fola | 1-0 | Aberdeen | 2-3 | ||
| q1l2 | Nõmme Kalju | 4-1 | Riteriai | 5-3 | ||
| q1l2 | Ordabasy | 3-3 | Čukarički | 3-6 | ||
| q1l2 | Spartaks | 0-2 | Dinamo Minsk | 1-4 | ||
| q1l2 | Jelgava* | 2-2 | Breiðablik | 5-4 | ||
| q1l2 | Víkingur | 0-2 | JFK Ventspils | 0-4 | ||
| q1l2 | Bala Town | 0-2 | AIK | 0-4 | ||
| q1l2 | Lusitanos | 1-2 | Domžale | 2-5 | ||
| q1l2 | Spartak Myjava | 2-3 | Admira | 3-4 | ||
