| ROUND | Q1 | Q2 | R1 | R2 | R3 | R4 | QF | SF | F | |||||||||||
| l1 | l2 | l1 | l2 | l1 | l2 | r1 | r2 | r3 | r4 | r5 | l1 | l2 | l1 | l2 | l1 | l2 | l1 | l2 | ||
| Season archive |
| Tuesday, 8 August 2006 | |||||
| q2l1 |  Omonia | 0-0 | Litex | ||
| q2l1 |  OFK Beograd | 1-0 | Auxerre | ||
| 31 | Bajalica | ||||
| Thursday, 10 August 2006 | |||||
| q2l1 | CSKA | 0-0 | Hajduk Kula | ||
| q2l1 |  Start | 1-0 | Drogheda United | ||
| 66 | Strømstad | ||||
| q2l1 |  FC Twente | 1-1 | Levadia Tallinn | ||
| 53 | Heubach | 24 | Andreev | ||
| q2l1 |  Dinamo București | 1-0 | Beitar Jerusalem | ||
| 77 | Munteanu | ||||
| q2l1 |  Young Boys | 3-3 | Marseille | ||
| 20 | Yakin | 18 | Zubar | ||
| 49 | João Paulo | 44 | Niang | ||
| 73 | Marcos | 57 | Niang | ||
| q2l1 |  OB | 1-0 | Llanelli Town | ||
| 29 | Bechara | ||||
| q2l1 | Molde | 0-0 | Skonto | ||
| q2l1 | Brann | 3-3 | Åtvidaberg | ||
| 4 | Memelli | 27 | Haglund | ||
| 26 | Memelli | 48 | Bergström | ||
| 59 | Memelli | 83 | Karlsson | ||
| q2l1 |  MOL Fehérvár | 1-1 | Grasshoppers | ||
| 90 | Horváth | 70 | Pinto | ||
| q2l1 |  Chornomorets | 0-0 | Wisła Płock | ||
| q2l1 |  Gretna | 1-5 | Derry City | ||
| 12 | McGuffie | 23 | Kelly | ||
| 54 | Deery | ||||
| 56 | Deery | ||||
| 63 | Martyn | ||||
| 75 | Martyn | ||||
| q2l1 | Partizan | 2-1 | Maribor | ||
| 28 | Odita | 64 | Mihelič | ||
| 30 | Odita | ||||
| q2l1 |  Hertha BSC Berlin | 1-0 | Ameri Tbilisi | ||
| 90 | Okoronkwo | ||||
| q2l1 | APOEL | 1-1 | Trabzonspor | ||
| 2 | Ricardo Fernandes | 90 | Yattara | ||
| q2l1 | FC Basel | 1-0 | Vaduz | ||
| 58 | Majstorovic | ||||
| q2l1 |  SV Ried | 0-0 | Sion | ||
| q2l1 |  Tirana | 0-2 | Kayserispor | ||
| 26 | Akagündüz | ||||
| 45 | Akagündüz | ||||
| q2l1 | Hapoel Tel Aviv | 1-2 | Domžale | ||
| 42 | De Bruno | 65(p) | Ljubijankić | ||
| 90 | Ljubijankić | ||||
| q2l1 |  FC Petrzalka 1898 | 2-1 | Dinamo Minsk | ||
| 73 | Reiter | 22 | Edu | ||
| 76 | Cišovský | ||||
| q2l1 |  Zimbru | 0-0 | Metalurh Zaporizhzhya* | ||
| q2l1 | Flora | 0-0 | Brøndby | ||
| q2l1 |  Roeselare | 2-1 | Ethnikos Achna | ||
| 36 | Dufoor | 78(p) | Stjepanovic | ||
| 80 | Oris | ||||
| q2l1 | Bnei Yehuda | 0-2 | Lokomotiv Sofia | ||
| 30 | Dafchev | ||||
| 57(p) | Genkov | ||||
| q2l1 |  Rubin | 3-0 | BATE | ||
| 37 | Bazaev | ||||
| 57 | Ashvetia | ||||
| 68 | Ashvetia | ||||
| q2l1 |  Sarajevo | 1-0 | Rapid București | ||
| 90 | |||||
| q2l1 | JFK Ventspils | 0-1 | Newcastle United | ||
| 67 | Bramble | ||||
| q2l1 | Randers | 3-1 | Kaunas | ||
| 59 | Fall | 80 | Juška | ||
| 82 | Ahmed | ||||
| 90(p) | Møller Pedersen | ||||
| q2l1 | SV Mattersburg | 1-1 | Wisła Kraków | ||
| 20 | Naumoski | 14 | Zieńczuk | ||
| q2l1 | Sūduva | 0-2 | Club Brugge | ||
| 19 | Daerden | ||||
| 70 | Roelandts | ||||
| q2l1 |  Karvan | 0-2 | Slavia Praha | ||
| 14 | Hrdlicka | ||||
| 90 | Fořt | ||||
